页次： 1
#1 2023-07-28 09:27:37
- Syize
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- 注册时间： 2022-10-24
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更新geos后导致netCDF4出错
更新后的geos包似乎有些问题，会导致netCDF4出错，降级到3.11版本后就没有错误了。建议先不升级。以下是出错的日志
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libcurl-8c767087.so.4.7.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libcurl-8c767087.so.4.7.0
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libhdf5-e4aac3a0.so.200.2.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libhdf5-e4aac3a0.so.200.2.0
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libzstd-c4cc7033.so.1.5.2 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libzstd-c4cc7033.so.1.5.2
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libnetcdf-569e0782.so.19 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libnetcdf-569e0782.so.19
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libblosc-a9e8a7c7.so.1.21.1 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libblosc-a9e8a7c7.so.1.21.1
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4/_netCDF4.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4/_netCDF4.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/_selector.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/_selector.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5l.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5l.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5o.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5o.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5fd.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5fd.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5g.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5g.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5f.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5f.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5ds.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5ds.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5d.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5d.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py.libs/libhdf5-45610c27.so.200.2.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py.libs/libhdf5-45610c27.so.200.2.0
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5i.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5i.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/_proxy.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/_proxy.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5a.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5a.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5z.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5z.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5p.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5p.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5t.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5t.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5pl.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5pl.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5ac.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5ac.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5s.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5s.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/_conv.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/_conv.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/_objects.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/_objects.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/defs.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/defs.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libgeos-d914d573.so.3.11.2 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libgeos-d914d573.so.3.11.2
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5r.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5r.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/h5.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py.libs/libhdf5_hl-408a1995.so.200.1.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py.libs/libhdf5_hl-408a1995.so.200.1.0
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libproj-d76c87e1.so.25.9.0.1 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libproj-d76c87e1.so.25.9.0.1
Module /home/syize/.local/lib/python3.11/site-packages/h5py/utils.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/utils.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/h5py.libs/libaec-8db54129.so.0.0.10 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/shapely/vectorized/_vectorized.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/shapely/vectorized/_vectorized.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/fiona/crs.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/fiona/crs.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/fiona/ogrext.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/fiona/ogrext.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libpcre-9513aab5.so.1.2.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libpcre-9513aab5.so.1.2.0
Module /home/syize/.local/lib/python3.11/site-packages/h5py.libs/libsz-60c3b967.so.2.0.1 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/_errors.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/h5py/_errors.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libsqlite3-83998bda.so.0.8.6 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libsqlite3-83998bda.so.0.8.6
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libcurl-5c5c6c20.so.4.7.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libcurl-5c5c6c20.so.4.7.0
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libgdal-b2ad7d4e.so.31.0.3 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libgdal-b2ad7d4e.so.31.0.3
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libnghttp2-e183d352.so.14.21.1 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libnghttp2-e183d352.so.14.21.1
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libgeos_c-3b303efa.so.1.17.2 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libgeos_c-3b303efa.so.1.17.2
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libpng16-8ebcc106.so.16.35.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libpng16-8ebcc106.so.16.35.0
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libjpeg-82e9a1fb.so.9.3.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libjpeg-82e9a1fb.so.9.3.0
Module /home/syize/.local/lib/python3.11/site-packages/fiona/_geometry.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/fiona/_geometry.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/fiona/_err.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/fiona/_err.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libtiff-104e144c.so.5.7.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libtiff-104e144c.so.5.7.0
Module /home/syize/.local/lib/python3.11/site-packages/fiona/_env.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/fiona/_env.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/pyproj.libs/libcurl-7f9a63ea.so.4.7.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj.libs/libcurl-7f9a63ea.so.4.7.0
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_crs.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_crs.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/pyproj.libs/libproj-8d95adc6.so.25.9.2.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj.libs/libproj-8d95adc6.so.25.9.2.0
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libjson-c-b8129721.so.5.1.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Fiona.libs/libjson-c-b8129721.so.5.1.0
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_transformer.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_transformer.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/database.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/database.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/pyproj.libs/libsqlite3-e6e8c34c.so.0.8.6 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj.libs/libsqlite3-e6e8c34c.so.0.8.6
Module /home/syize/.local/lib/python3.11/site-packages/pyproj.libs/libsqlite3-e6e8c34c.so.0.8.6
Module /home/syize/.local/lib/python3.11/site-packages/Shapely.libs/libgeos_c-c8ec7514.so.1.16.1 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Shapely.libs/libgeos_c-c8ec7514.so.1.16.1
Module /home/syize/.local/lib/python3.11/site-packages/pyproj.libs/libtiff-8ee24f76.so.5.8.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj.libs/libtiff-8ee24f76.so.5.8.0
Module /home/syize/.local/lib/python3.11/site-packages/Shapely.libs/libgeos-35e678a0.so.3.10.3 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/Shapely.libs/libgeos-35e678a0.so.3.10.3
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_sync.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_sync.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/list.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/list.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_geod.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_geod.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_compat.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_compat.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_datadir.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_datadir.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/pyproj.libs/libnghttp2-62f02794.so.14.20.1 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj.libs/libnghttp2-62f02794.so.14.20.1
Module /home/syize/.local/lib/python3.11/site-packages/shapely/speedups/_speedups.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/shapely/speedups/_speedups.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_network.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/pyproj/_network.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libaec-e300f322.so.0.0.12 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libsz-57467d8a.so.2.0.1 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libhdf5_hl-f45ebdf9.so.200.1.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/netCDF4.libs/libhdf5_hl-f45ebdf9.so.200.1.0
Module /home/syize/.local/lib/python3.11/site-packages/numpy.libs/libquadmath-96973f99.so.0.0.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/numpy.libs/libquadmath-96973f99.so.0.0.0
Module /home/syize/.local/lib/python3.11/site-packages/numpy/linalg/_umath_linalg.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/numpy/linalg/_umath_linalg.cpython-311-x86_64-linux-gnu.so
Module /home/syize/.local/lib/python3.11/site-packages/numpy.libs/libgfortran-040039e1.so.5.0.0 without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/numpy.libs/libgfortran-040039e1.so.5.0.0
Module /home/syize/.local/lib/python3.11/site-packages/numpy.libs/libopenblas64_p-r0-15028c96.3.21.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/numpy.libs/libopenblas64_p-r0-15028c96.3.21.so
Module /home/syize/.local/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-x86_64-linux-gnu.so without build-id.
Module /home/syize/.local/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-x86_64-linux-gnu.so
Module libintlc.so.5 without build-id.
Module libsvml.so without build-id.
Stack trace of thread 12388:
#0 0x00007f6b36d821f0 _ZN4geos6noding9snapround29SnapRoundingIntersectionAdder20processIntersectionsEPNS0_13SegmentStringEmS4_m (libgeos.so.3.12.0 + 0x1821f0)
#1 0x00007f6b37ef981c n/a (/home/syize/.local/lib/python3.11/site-packages/Shapely.libs/libgeos-35e678a0.so.3.10.3 + 0xf981c)
#2 0x000055c21272f2e0 n/a (n/a + 0x0)
ELF object binary architecture: AMD x86-64离线
#2 2023-07-28 10:19:39
- 依云
- 会员
- 所在地： a.k.a. 百合仙子
- 注册时间： 2011-08-21
- 帖子： 8,919
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Re: 更新geos后导致netCDF4出错
我看不出有任何包有任何问题——你这个程序加载的全是你 ~/.local 下的模块，根本没用 Arch 的包啊……
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#3 2023-07-28 16:53:27
- Syize
- 会员
- 注册时间： 2022-10-24
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Re: 更新geos后导致netCDF4出错
依云 说：
我看不出有任何包有任何问题——你这个程序加载的全是你 ~/.local 下的模块，根本没用 Arch 的包啊……
是的，但是奇怪的是在升级geos之后会导致如日志中的显示的错误。在降级goes到3.11.2之后就不会产生这个错误了。具体到底是什么原因导致的我还没有深究。
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#4 2023-07-28 16:57:52
- 依云
- 会员
- 所在地： a.k.a. 百合仙子
- 注册时间： 2011-08-21
- 帖子： 8,919
- 个人网站
Re: 更新geos后导致netCDF4出错
原因就是你自己编译的要求旧版本的 geos 啊。
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页次： 1